Publications 2023

  1. Ni Z, Wölk M, Jukes G, Mendivelso Espinosa K, Ahrends R, Aimo L, Alvarez-Jarreta J, Andrews S, Andrews R, Bridge A, Clair GC, Conroy MJ, Fahy E, Gaud C, Goracci L, Hartler J, Hoffmann N, Kopczyinki D, Korf A, Lopez-Clavijo AF, Malik A, Ackerman JM, Molenaar MR, O'Donovan C, Pluskal T, Shevchenko A, Slenter D, Siuzdak G, Kutmon M, Tsugawa H, Willighagen EL, Xia J, O'Donnell VB, Fedorova M. Guiding the choice of informatics software and tools for lipidomics research applications. Nat Methods. 2023 Feb;20(2):193-204. doi: 10.1038/s41592-022-01710-0. Epub 2022 Dec 21. PMID: 36543939; PMCID: PMC10263382.
  2. Manke MC, Roslan A, Walker B, Münzer P, Kollotzek F, Peng B, Mencl S, Coman C, Szepanowski RD, Schulze H, Lieberman AP, Lang F, Gawaz M, Kleinschnitz C, Lukowski R, Ahrends R, Bobe R, Borst O. Niemann-Pick C1 protein regulates platelet membrane-associated calcium ion signaling in thrombo-occlusive diseases in mice. J Thromb Haemost. 2023 Jul;21(7):1957-1966. doi: 10.1016/j.jtha.2023.03.038. Epub 2023 Apr 11. PMID: 37054918.
  3. Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Thomas H, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, Shevchenko A. Eye proteome of Drosophila melanogaster. Proteomics. 2023 Nov 14:e2300330. doi: 10.1002/pmic.202300330. Epub ahead of print. PMID: 37963819.
  4. Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, Shevchenko A. Eye proteome of Drosophila melanogaster. bioRxiv [Preprint]. 2023 Mar 6:2023.03.04.531088. doi: 10.1101/2023.03.04.531088. Update in: Proteomics. 2023 Nov 14;:e2300330. PMID: 36945598; PMCID: PMC10028839.
  5. Troppmair N, Kopczynski D, Assinger A, Lehmann R, Coman C, Ahrends R. Accurate Sphingolipid Quantification Reducing Fragmentation Bias by Nonlinear Models. Anal Chem. 2023 Oct 17;95(41):15227-15235. doi: 10.1021/acs.analchem.3c02445. Epub 2023 Oct 2. PMID: 37782305; PMCID: PMC10585660.
  6. Kopczynski D, Hoffmann N, Troppmair N, Coman C, Ekroos K, Kreutz MR, Liebisch G, Schwudke D, Ahrends R. LipidSpace: Simple Exploration, Reanalysis, and Quality Control of Large-Scale Lipidomics Studies. Anal Chem. 2023 Oct 17;95(41):15236-15244. doi: 10.1021/acs.analchem.3c02449. Epub 2023 Oct 4. PMID: 37792961; PMCID: PMC10585661.
  7. Foest D, Knodel A, Ahrends R, Coman C, Franzke J, Brandt S. Flexible Microtube Plasma for the Consecutive-Ionization of Cholesterol in Nano-Electrospray Mass Spectrometry. Anal Chem. 2023 Jun 6;95(22):8423-8432. doi: 10.1021/acs.analchem.2c04052. Epub 2023 May 23. PMID: 37220280.
  8. de Jonckheere B, Kollotzek F, Münzer P, Göb V, Fischer M, Mott K, Coman C, Troppmair NN, Manke MC, Zdanyte M, Harm T, Sigle M, Kopczynski D, Bileck A, Gerner C, Hoffmann N, Heinzmann D, Assinger A, Gawaz M, Stegner D, Schulze H, Borst O, Ahrends R. Critical shifts in lipid metabolism promote megakaryocyte differentiation and proplatelet formation. Nat Cardiovasc Res. 2023 Sep;2:835-852. doi: 10.1038/s44161-023-00325-8. Epub 2023 Aug 31. PMID: 38075556; PMCID: PMC7615361.
  9. Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M, Poupault C, Schuhmann K, Knittelfelder O, Raghuraman BK, Ahrends R, Rister J, Shevchenko A. Lipidome unsaturation affects the morphology and proteome of the Drosophila eye. bioRxiv [Preprint]. 2023 May 8:2023.05.07.539765. doi: 10.1101/2023.05.07.539765. PMID: 37214967; PMCID: PMC10197557.
  10. Heimerl S, Höring M, Kopczynski D, Sigruener A, Hart C, Burkhardt R, Black A, Ahrends R, Liebisch G. Quantification of bulk lipid species in human platelets and their thrombin-induced release. Sci Rep. 2023 Apr 15;13(1):6154. doi: 10.1038/s41598-023-33076-4. PMID: 37061580; PMCID: PMC10105721.
  11. Cheung HYF, Zou J, Tantiwong C, Fernandez DI, Huang J, Ahrends R, Roest M, Cavill R, Gibbins J, Heemskerk JWM. High-throughput assessment identifying major platelet Ca2+ entry pathways via tyrosine kinase-linked and G protein-coupled receptors. Cell Calcium. 2023 Jun;112:102738. doi: 10.1016/j.ceca.2023.102738. Epub 2023 Apr 8. PMID: 37060673.
  12. Wang Q, Hoene M, Hu C, Fritsche L, Ahrends R, Liebisch G, Ekroos K, Fritsche A, Birkenfeld AL, Liu X, Zhao X, Li Q, Su B, Peter A, Xu G, Lehmann R. Ex vivo instability of lipids in whole blood: preanalytical recommendations for clinical lipidomics studies. J Lipid Res. 2023 Jun;64(6):100378. doi: 10.1016/j.jlr.2023.100378. Epub 2023 Apr 21. PMID: 37087100; PMCID: PMC10208886.