Publications

McDonald JG, Ejsing CS, Kopczynski D, Holcapek M, Aoki J, Arita M et al. Introducing the Lipidomics Minimal Reporting Checklist. Nature Metabolism. 2022 Aug;4(9):1086-1088. doi: 10.1038/s42255-022-00628-3

Kumar M, Has C, Lam-Kamath K, Ayciriex S, Dewett D, Bashir M et al. Vitamin A Deficiency Alters the Phototransduction Machinery and Distinct Non-Vision-Specific Pathways in the Drosophila Eye Proteome. Biomolecules. 2022 Aug;12(8):1083. doi: 10.3390/biom12081083

Hoffmann N, Mayer G, Has C, Kopczynski D, Al Machot F, Schwudke D et al. A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics. Metabolites. 2022 Jul;12(7):584. doi: 10.3390/metabo12070584

Ariens RA, Hunt BJ, Agbani EO, Ahnstrom J, Ahrends R, Alikhan R et al. Illustrated State-of-the-Art Capsules of the ISTH 2022 Congress. Research and practice in thrombosis and haemostasis. 2022 Jul;6(5):e12747. doi: 10.1002/rth2.12747

Kopczynski D, Hoffmann N, Peng B, Liebisch G, Spener F, Ahrends R. Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures. Analytical Chemistry. 2022 Apr 26;94(16):6097-6101. doi: 10.1021/acs.analchem.1c05430

Li T, Hentschel A, Ahrends R. Analytical comparison of absolute quantification strategies to investigate the Insulin signaling pathway in fat cells. Proteomics. 2022 Apr;22(7):e2100136. Epub 2021 Dec 29. doi: 10.1002/pmic.202100136

Michel L, Helfrich I, Hendgen-Cotta UB, Mincu RI, Korste S, Mrotzek SM et al. Targeting early stages of cardiotoxicity from anti-PD1 immune checkpoint inhibitor therapy. European Heart Journal. 2022 Jan 21;43(4):316-329. doi: 10.1093/eurheartj/ehab430

Wolrab D, Jirasko R, Cifkova E, Horing M, Mei D, Chocholouskova M et al. Lipidomic profiling of human serum enables detection of pancreatic cancer. Nature Communications. 2022 Jan 10;13(1):124. doi: 10.1038/s41467-021-27765-9

Confettura AD, Cuboni E, Ammar MR, Jia S, Gomes GM, Yuanxiang P et al. Neddylation-dependent protein degradation is a nexus between synaptic insulin resistance, neuroinflammation and Alzheimer's disease. Translational neurodegeneration. 2022 Jan 6;11(1):2. doi: 10.1186/s40035-021-00277-8

Borgmeyer M, Coman C, Has C, Schoett HF, Li T, Westhoff P et al. Multiomics of synaptic junctions reveals altered lipid metabolism and signaling following environmental enrichment. Cell Reports. 2021 Oct 5;37(1):109797. doi: 10.1016/j.celrep.2021.109797

Manke MC, Geue S, Coman C, Peng B, Kollotzek F, Muenzer P et al. ANXA7 Regulates Platelet Lipid Metabolism and Ca2+ Release in Arterial Thrombosis. Circulation Research. 2021 Aug 6;129(4):494-507. doi: 10.1161/CIRCRESAHA.121.319207

Koefeler HC, Eichmann TO, Ahrends R, Bowden JA, Danne-Rasche N, Dennis EA et al. Quality control requirements for the correct annotation of lipidomics data. Nature Communications. 2021 Aug 6;12(1):4771. doi: 10.1038/s41467-021-24984-y

Cheung HYF, Coman C, Westhoff P, Manke M, Sickmann A, Borst O et al. Targeted Phosphoinositides Analysis Using High-Performance Ion Chromatography-Coupled Selected Reaction Monitoring Mass Spectrometry. Journal of Proteome Research. 2021 Jun 4;20(6):3114-3123. doi: 10.1021/acs.jproteome.1c00017

Koefeler HC, Ahrends R, Baker ES, Ekroos K, Han X, Hoffmann N et al. Recommendations for good practice in MS-based lipidomics. Journal of Lipid Research. 2021;62:100138. doi: 10.1016/j.jlr.2021.100138

Danne-Rasche N, Rubenzucker S, Ahrends R. Uncovering the complexity of the yeast lipidome by means of nLC/NSI-MS/MS. Analytica Chimica Acta. 2020 Dec 15;1140:199-209. doi: 10.1016/j.aca.2020.10.012

van Geffen JP, Swieringa F, van Kuijk K, Tullemans BME, Solari FA, Peng B et al. Mild hyperlipidemia in mice aggravates platelet responsiveness in thrombus formation and exploration of platelet proteome and lipidome. Scientific Reports. 2020 Dec 8;10(1):21407. doi: 10.1038/s41598-020-78522-9

Michel L, Hendgen-Cotta UB, Mincu R, Helfrich EJN, Korste S, Mrolzek SM et al. Preclinical and clinical assessment of immune checkpoint inhibitor-associated left ventricular dysfunction. European Heart Journal. 2020 Nov;41:3260-3260.

Kopczynski D, Hentschel A, Coman C, Schebb NH, Hornemann T, Mashek DG et al. Simple Targeted Assays for Metabolic Pathways and Signaling: A Powerful Tool for Targeted Proteomics. Analytical Chemistry. 2020 Oct 20;92(20):13672-13676. doi: 10.1021/acs.analchem.0c02793

Panzenboeck L, Troppmair N, Schlachter S, Koellensperger G, Hartler J, Rampler E. Chasing the Major Sphingolipids on Earth: Automated Annotation of Plant Glycosyl Inositol Phospho Ceramides by Glycolipidomics. Metabolites. 2020 Sept;10(9):1-20. 375. doi: 10.3390/metabo10090375

Kopczynski D, Hoffmann N, Peng B, Ahrends R. Goslin: A Grammar of Succinct Lipid Nomenclature. Analytical Chemistry. 2020 Aug 18;92(16):10957-10960. doi: 10.1021/acs.analchem.0c01690